>>I don't understand why you need a second set of batteries (running at 12V),
For one, the MX60 does not "come alive" with voltage from the PV (high voltage) side, as is. And you can't just wire the input to the output without doing a bit of work... like maybe adding a smaller buck regulator that say, switches out once things get up and going (very carefuly)
And two, I think that the low voltage side (12V, 24V, etc.) voltage regulation response time to changing loads will be much better because a battery, even some
small battery, being more of a voltage source, will help while the slower responding charge controller has more time to regulate.
A buck converter can be made to have a fast response time, but being a charge controller, it's not quite ~THAT~ fast.
boB